Loss-of-function Mutations in Phage K gp102 Lead to Improved Antibacterial Activity against USA300 MRSA Growing at 37°C or Lacking the potABCD Operon
Susan M. Lehman *, Rohit Kongari, Adam M. Glass, Matthew Koert, Melissa D. Ray, Austin Neel, Alexandra Christensen, Roger D. Plaut, Scott Stibitz
- Center for Biologics Evaluation and Research
- US Food and Drug Administration
- Silver Spring MD
Susan Lehman (susan.lehman@fda.hhs.gov)
Among Staphylococcus aureus infections, the USA300 lineage is a frequent cause of invasive disease. We observed that phage K, a model S. aureus myophage, exhibits temperature-sensitive growth on USA300 strains, with the wild-type phage providing poorer growth suppression in broth and forming smaller and fainter plaques at 37°C vs. 30°C. We isolated 65 mutants of phage K that had improved plaquing characteristics at 37°C when compared to the parental phage. In all 65 mutants, this phenotype was attributable to loss-of-function (LoF) mutations in gp102, which encodes a protein of unknown function that has homologs only among the Herelleviridae (SPO1-like myophages infecting gram-positive bacteria).
Additional experiments with representative mutants consistently showed that the temperature-sensitive plaque phenotype was specific to USA300 MRSA strains and that Gp102 disruption was correlated with improved suppression of bacterial growth in broth and improved antibacterial activity in a mouse model of upper respiratory tract infection. The same genotype and in vitro phenotypes could be replicated in close relatives of phage K. Gp102 disruption did not have a detectable effect on adsorption but did delay cell culture lysis relative to wild-type under permissive infection conditions, suggesting that gp102 conservation might be maintained by selective pressure for more rapid replication.
Molecular modeling of Gp102 predicts a protein with two helix-turn-helix domains that displays some similarity to DNA-binding proteins such as transcription factors. While its function remains unclear, gp102 is a conserved gene that is important to the infection process of Kayvirus phages, and it appears that the manner in which USA300 strains defend against them at 37°C can be overcome by gp102 LoF mutations. Additionally, deleting the polyamine uptake system (potABCD) from USA300 strains reduces the activity of phage K at both 37°C and 30°C; Gp102 disruption overcomes this phage growth restriction as well.